STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53018.1Extradiol ring-cleavage dioxygenase class III protein subunit B; COGs: COG3384 conserved hypothetical protein; InterPro IPR014436: IPR 004183; KEGG: phe:Phep_4269 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; SPTR: Extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase. (279 aa)    
Predicted Functional Partners:
ADY53017.1
COGs: COG2910 Putative NADH-flavin reductase; InterPro IPR000846; KEGG: fjo:Fjoh_5020 NAD-dependent epimerase/dehydratase; PFAM: dihydrodipicolinate reductase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NmrA-like family.
  
  
 0.799
ADY53016.1
Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: dfe:Dfer_1079 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, BadM/Rrf2 family protein; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator).
  
  
 0.680
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.574
ADY51181.1
COGs: COG1741 Pirin-related protein; InterPro IPR003829: IPR 012093; KEGG: fjo:Fjoh_1735 pirin domain-containing protein; PFAM: Pirin domain protein; SPTR: Pirin-related protein; PFAM: Pirin; Belongs to the pirin family.
 
  
 0.558
ADY51959.1
COGs: COG1741 Pirin-related protein; InterPro IPR003829: IPR 008778: IPR 012093; KEGG: fjo:Fjoh_3490 pirin domain-containing protein; PFAM: Pirin domain protein; SPTR: Pirin domain protein; PFAM: Pirin C-terminal cupin domain; Pirin; Belongs to the pirin family.
 
  
 0.495
ADY53014.1
Luciferase family oxidoreductase, group 1; COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048: IPR 019949; KEGG: cpi:Cpin_4929 luciferase-like monooxygenase; PFAM: Luciferase-like, subgroup; SPTR: Luciferase-like monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1.
       0.460
ADY53015.1
KEGG: cat:CA2559_01880 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.456
ADY54059.1
COGs: COG1741 Pirin-related protein; InterPro IPR003829: IPR 008778: IPR 012093; KEGG: apb:SAR116_1544 pirin family protein; PFAM: Pirin domain protein; SPTR: Pirin family protein; PFAM: Pirin C-terminal cupin domain; Pirin; Belongs to the pirin family.
 
  
 0.428
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.411
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.