STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53113.1Xylan 1,4-beta-xylosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR005084: IPR 006710: IPR 006584; KEGG: zpr:ZPR_1030 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; PRIAM: Xylan 1,4-beta-xylosidase; SMART: cellulose binding type IV; SPTR: Possible endo-1,4-beta-xylanase; PFAM: Carbohydrate binding module (family 6); Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (455 aa)    
Predicted Functional Partners:
ADY53114.1
Xylan 1,4-beta-xylosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR005084: IPR 006710: IPR 006584; KEGG: bvu:BVU_0032 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; PRIAM: Xylan 1,4-beta-xylosidase; SMART: cellulose binding type IV; SPTR: Possible endo-1,4-beta-xylanase; PFAM: Carbohydrate binding module (family 6); Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.971
ADY53112.1
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: sli:Slin_1420 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; SPTR: Glycoside hydrolase family 43; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     0.952
ADY53118.1
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR005084: IPR 006710: IPR 006584; KEGG: zpr:ZPR_1028 glycosyl hydrolase; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; SMART: cellulose binding type IV; SPTR: Putative uncharacterized protein; PFAM: Carbohydrate binding module (family 6); Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.948
ADY53963.1
alpha-L-arabinofuranosidase domain protein; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: fjo:Fjoh_3113 alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Alpha-L-arabinofuranosidase A; PFAM: Alpha-L-arabinofuranosidase C-terminus.
 
 
 0.935
ADY53962.1
alpha-L-arabinofuranosidase domain protein; COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: fjo:Fjoh_1118 alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein; SPTR: Candidate alpha-L-arabinofuranosidase; Glycoside hydrolase family 51; PFAM: Alpha-L-arabinofuranosidase C-terminus.
 
 
 0.925
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.813
uxaC
COGs: COG1904 Glucuronate isomerase; InterPro IPR003766; KEGG: dfe:Dfer_4124 glucuronate isomerase; PFAM: Glucuronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Glucuronate isomerase; PFAM: Glucuronate isomerase.
    
 0.808
ADY53181.1
Beta-glucuronidase; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006101: IPR 006104: IPR 006102: IPR 006103; KEGG: zpr:ZPR_2938 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; PRIAM: Beta-glucuronidase; SPTR: Glycoside hydrolase family protein; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain.
   
 
  0.800
ADY53122.1
InterPro IPR005181; KEGG: zpr:ZPR_1024 putative esterase; PFAM: protein of unknown function DUF303 acetylesterase; SPTR: Putative esterase; PFAM: Domain of unknown function (DUF303).
   
 0.774
ADY53116.1
Glycoside hydrolase 97; InterPro IPR019563; KEGG: zpr:ZPR_1031 glycoside hydrolase; PFAM: Glycoside hydrolase 97; SPTR: Glycoside hydrolase; PFAM: Glycoside hydrolase 97.
 
     0.765
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.