STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53377.1KEGG: gfo:GFO_0860 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Post-segregation antitoxin CcdA. (97 aa)    
Predicted Functional Partners:
ADY53378.1
PilT protein domain protein; InterPro IPR002716: IPR 006596: IPR 002850; KEGG: hor:Hore_13700 PIN domain protein; PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; SPTR: PIN domain containing protein; PFAM: PIN domain; TIGRFAM: probable toxin-antitoxin system toxin component, PIN family.
       0.773
ADY53376.1
COGs: COG0688 Phosphatidylserine decarboxylase; InterPro IPR003817: IPR 005221; KEGG: cpr:CPR_0033 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor; Belongs to the phosphatidylserine decarboxylase family.
       0.536
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.