STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53440.1Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR 007492; KEGG: phe:Phep_0217 LytTr DNA-binding region; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: LytTr DNA-binding region; PFAM: Response regulator receiver domain; LytTr DNA-binding domain. (253 aa)    
Predicted Functional Partners:
ADY53439.1
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0216 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Histidine kinase internal region; PFAM: Histidine kinase.
 
 
 0.975
ADY53080.1
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559: IPR 003594; KEGG: sli:Slin_6581 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SPTR: Putative uncharacterized protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.865
ADY53473.1
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_1541 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: LytS family signal transduction histidine kinase; PFAM: Histidine kinase.
 
 
 0.864
ADY53441.1
KEGG: cpi:Cpin_5816 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF481.
       0.592
ADY53438.1
KEGG: mat:MARTH_orf142 ABC transporter permease protein; SPTR: ABC transporter permease protein.
       0.482
ADY53442.1
COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: phe:Phep_0218 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases.
       0.471
ADY53437.1
Thiol-disulfide oxidoreductase DCC; COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: chu:CHU_2470 hypothetical protein; PFAM: thiol-disulphide oxidoreductase DCC; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF393.
       0.419
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.