STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53719.1COGs: COG4654 Cytochrome c551/c552; InterPro IPR002324: IPR 009056: IPR 003088; KEGG: phe:Phep_3648 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Cytochrome c. (108 aa)    
Predicted Functional Partners:
ADY54320.1
COGs: COG4654 Cytochrome c551/c552; InterPro IPR002324: IPR 003088: IPR 009056; KEGG: phe:Phep_3648 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c551/c552; PFAM: Cytochrome c.
  
  
 
0.905
ADY53718.1
KEGG: cpi:Cpin_5417 twin-arginine translocation pathway signal; SPTR: Twin-arginine translocation pathway signal.
 
     0.813
ADY53720.1
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: phe:Phep_3653 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel.
       0.790
ADY53717.1
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: phe:Phep_3649 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
       0.776
ADY54321.1
InterPro IPR010496; KEGG: phe:Phep_3650 protein of unknown function DUF1080; PFAM: protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF1080).
      0.765
ADY53721.1
KEGG: phe:Phep_0165 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.577
ADY54176.1
COGs: COG4263 Nitrous oxide reductase; InterPro IPR002429; KEGG: dfe:Dfer_0693 nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II; PRIAM: Nitrous-oxide reductase; SPTR: Nitrous-oxide reductase; PFAM: Cytochrome C oxidase subunit II, periplasmic domain.
 
  
 0.575
ADY53281.1
COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: phe:Phep_4199 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family.
  
     0.558
ADY51284.1
KEGG: phe:Phep_0336 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.553
ADY51621.1
InterPro IPR001202; KEGG: phe:Phep_0731 Crp/FNR family transcriptional regulator; SPTR: Putative uncharacterized protein; PFAM: Trehalose utilisation.
 
      0.520
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.