STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53745.1KEGG: gfo:GFO_2859 hypothetical protein; SPTR: Putative uncharacterized protein. (426 aa)    
Predicted Functional Partners:
ADY53746.1
COGs: COG0035 Uracil phosphoribosyltransferase; KEGG: phe:Phep_4038 uracil phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase.
  
    0.832
ADY53747.1
HAD superfamily (subfamily IA) hydrolase, TIGR02254; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005833: IPR 011951: IPR 006439: IPR 005834; KEGG: phe:Phep_4039 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Probable haloacid dehalogenase-like hydrolase; TIGRFAM: HAD superfamily (subfamily IA) hydrolase, TIGR02254; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or [...]
  
    0.645
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.637
ADY52562.1
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: phe:Phep_0881 peptidase M23; PFAM: Peptidase M23; SPTR: Putative uncharacterized protein; PFAM: Peptidase family M23.
  
    0.559
ADY53064.1
Gliding motility associated protein GldN; InterPro IPR019847; KEGG: phe:Phep_0386 hypothetical protein; SPTR: Gliding related protein, gldN and/or gldO; TIGRFAM: gliding motility associated protien GldN; TIGRFAM: gliding motility associated protien GldN.
  
     0.532
ADY53796.1
KEGG: chu:CHU_3705 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.497
ADY53743.1
KEGG: phe:Phep_4034 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.474
ADY51570.1
TonB-dependent receptor; InterPro IPR012910: IPR 000531; KEGG: phe:Phep_1856 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain.
  
     0.455
ADY53622.1
Gliding motility-associated lipoprotein GldH; InterPro IPR020018; KEGG: phe:Phep_0077 hypothetical protein; SPTR: Gliding motility protein; TIGRFAM: gliding motility-associated lipoprotein GldH; TIGRFAM: gliding motility-associated lipoprotein GldH.
  
     0.443
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.