STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53820.1Transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR 001761; KEGG: phe:Phep_1148 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Periplasmic binding protein/LacI transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family. (335 aa)    
Predicted Functional Partners:
ADY50773.1
Glutamate synthase (NADH) large subunit; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR017932: IPR 000583: IPR 006982: IPR 002932: IPR 002489; KEGG: cpi:Cpin_0730 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (NADH) large subunit; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
    
 
 0.799
ADY53819.1
Protein of unknown function DUF162; COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterPro IPR003741: IPR 017900; KEGG: phe:Phep_3823 protein of unknown function DUF162; PFAM: protein of unknown function DUF162; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein.
   
   0.599
ADY51310.1
Transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843; KEGG: phe:Phep_1700 regulatory protein LacI; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Regulatory protein LacI; PFAM: Bacterial regulatory proteins, lacI family.
  
     0.474
ADY51311.1
Transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843; KEGG: phe:Phep_1700 regulatory protein LacI; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; SPTR: Regulatory protein LacI; PFAM: Bacterial regulatory proteins, lacI family.
  
     0.402
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.