STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53879.1Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484: IPR 018485; KEGG: phe:Phep_1605 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Xylulose kinase (Xylulokinase); PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain. (496 aa)    
Predicted Functional Partners:
xylA
COGs: COG2115 Xylose isomerase; InterPro IPR001998: IPR 013452: IPR 012307; KEGG: phe:Phep_1604 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; PRIAM: Xylose isomerase; SPTR: Xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.995
ADY50935.1
COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: phe:Phep_2730 L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; SPTR: Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase.
  
 
 0.938
ADY51569.1
COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: phe:Phep_1855 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase.
 
 
 0.924
ADY53877.1
SSS sodium solute transporter superfamily; COGs: COG4146 symporter; InterPro IPR001734: IPR 019900; KEGG: phe:Phep_1152 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS family solute/sodium (Na+) symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.745
ADY53880.1
Transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR 001761; KEGG: cpi:Cpin_1464 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: LacI family transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family.
 
 
 
 0.666
ADY52624.1
InterPro IPR008000; KEGG: cpi:Cpin_1991 protein of unknown function DUF718; PFAM: protein of unknown function DUF718; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF718).
  
  
 0.652
ADY54268.1
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.652
ADY54295.1
Transcriptional regulator, GntR family; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524; KEGG: phe:Phep_3881 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Putative transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family.
 
 
 0.553
ADY53881.1
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: chu:CHU_2793 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain.
       0.449
ADY54297.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG3347 conserved hypothetical protein; InterPro IPR002347: IPR 002198: IPR 013454: IPR 001303; KEGG: phe:Phep_3884 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; SPTR: Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
  
  
 0.425
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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