STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY53981.1Rhomboid family protein; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: phe:Phep_0483 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Putative transmembrane rhomboid family protein; PFAM: Rhomboid family. (292 aa)    
Predicted Functional Partners:
ADY53982.1
Rhomboid family protein; COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: cpi:Cpin_0861 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Putative transmembrane rhomboid family protein; PFAM: Rhomboid family.
 
    
0.854
ADY53980.1
Endonuclease/exonuclease/phosphatase; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: phe:Phep_0484 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family.
       0.841
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
  
    0.837
ADY51985.1
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: phe:Phep_1869 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: Exported N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase.
  
   0.692
cysS
COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803: IPR 002308: IPR 015273; KEGG: phe:Phep_0485 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.639
ADY53985.1
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: phe:Phep_0479 beta-lactamase; PFAM: beta-lactamase; SPTR: Beta-N-acetylglucosaminidase; PFAM: Beta-lactamase.
 
     0.627
ADY53978.1
KEGG: phe:Phep_0486 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.615
ADY52650.1
KEGG: phe:Phep_3068 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2851).
 
     0.562
ADY53984.1
Hypothetical protein; KEGG: rcu:RCOM_0898890 pentatricopeptide repeat-containing protein, putative; SPTR: Pentatricopeptide repeat-containing protein, putative.
       0.555
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.511
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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