STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY54029.1KEGG: ant:Arnit_0999 hypothetical protein; SPTR: Putative uncharacterized protein. (290 aa)    
Predicted Functional Partners:
ADY54027.1
TatD-related deoxyribonuclease; COGs: COG0084 Mg-dependent DNase; InterPro IPR018228: IPR 001130: IPR 012278; KEGG: ant:Arnit_1001 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family.
  
    0.804
ADY54030.1
KAP P-loop domain protein; COGs: COG4928 P-loop ATPase; InterPro IPR011646; KEGG: ant:Arnit_0998 kap P-loop domain-containing protein; PFAM: KAP P-loop domain protein; SPTR: KAP family P-loop domain protein; PFAM: KAP family P-loop domain.
  
    0.801
ADY54028.1
KEGG: ant:Arnit_1000 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.792
ADY54032.1
Hypothetical protein; COGs: COG0433 ATPase; KEGG: zpr:ZPR_2243 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF87; Bacterial protein of unknown function (DUF853).
       0.716
ADY54031.1
Protein of unknown function DUF1016; COGs: COG4804 conserved hypothetical protein; InterPro IPR009362; KEGG: cpi:Cpin_6835 protein of unknown function DUF1016; PFAM: protein of unknown function DUF1016; SPTR: Protein of hypothetical function DUF1016; PFAM: Protein of unknown function (DUF1016).
       0.709
ADY54033.1
KEGG: zpr:ZPR_2242 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.709
ADY54034.1
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fps:FP0735 putative DNA binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
       0.637
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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