STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY54063.1RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR 007627: IPR 013249; KEGG: phe:Phep_0188 RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (189 aa)    
Predicted Functional Partners:
ADY54062.1
KEGG: bth:BT_4460 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
    0.753
ADY54061.1
Peptidase M1 membrane alanine aminopeptidase; COGs: COG0308 Aminopeptidase N; InterPro IPR014782: IPR 015211; KEGG: phe:Phep_2445 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; Leukotriene A4 hydrolase; SPTR: Peptidase M1 membrane alanine aminopeptidase; PFAM: Leukotriene A4 hydrolase, C-terminal; Peptidase family M1; TIGRFAM: leukotriene A-4 hydrolase/aminopeptidase.
 
     0.700
ADY54064.1
KEGG: phe:Phep_0186 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.680
ADY54060.1
Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fba:FIC_01412 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding-regulatory protein; PFAM: Cyclic nucleotide-binding domain.
  
    0.598
ADY50652.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR 013249: IPR 014284: IPR 014327; KEGG: phe:Phep_0443 RNA polymerase sigma-70 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: phage transcriptional regulator, ArpU family; RNA polymerase sigma factor, sigma-70 family; RNA polymeras [...]
  
     0.592
ADY51363.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR 014327: IPR 007627: IPR 013249; KEGG: phe:Phep_3968 RNA polymerase sigma-70 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion famil [...]
  
     0.553
ADY53857.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR 014327: IPR 007627: IPR 013249; KEGG: phe:Phep_3691 RNA polymerase sigma-70 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion [...]
  
     0.541
ADY54065.1
Export-related chaperone CsaA; COGs: COG0073 EMAP domain; InterPro IPR008231: IPR 002547; KEGG: phe:Phep_4223 export-related chaperone CsaA; PFAM: t-RNA-binding domain-containing protein; SPTR: Export-related chaperone CsaA; TIGRFAM: export-related chaperone CsaA; PFAM: Putative tRNA binding domain; TIGRFAM: export-related chaperone CsaA.
       0.524
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.504
ADY53924.1
KEGG: cat:CA2559_03115 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.459
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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