STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY54287.1L-fucose transporter; COGs: COG0738 Fucose permease; InterPro IPR005275: IPR 011701; KEGG: dfe:Dfer_5715 L-fucose transporter; PFAM: major facilitator superfamily MFS_1; SPTR: L-fucose transporter; TIGRFAM: L-fucose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease. (411 aa)    
Predicted Functional Partners:
ADY54286.1
KEGG: bth:BT_0127 putative transmembrane protein; SPTR: Putative uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.
  
    0.741
ADY54285.1
ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; KEGG: cpi:Cpin_2424 ROK family protein; SPTR: ROK family protein; PFAM: ROK family.
  
  
 0.713
ADY54284.1
Glycosyl hydrolase family 88; InterPro IPR010905; KEGG: fjo:Fjoh_2406 glycosy hydrolase family protein; PFAM: glycosyl hydrolase family 88; SPTR: Candidate d-4,5 unsaturated beta-glycuronidase; Glycoside hydrolase family 88; PFAM: Glycosyl Hydrolase Family 88.
       0.630
ADY52624.1
InterPro IPR008000; KEGG: cpi:Cpin_1991 protein of unknown function DUF718; PFAM: protein of unknown function DUF718; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF718).
 
  
 0.524
ADY54288.1
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR000639: IPR 001466: IPR 000073; KEGG: bvu:BVU_0119 putative beta-lactamase class C; PFAM: beta-lactamase; alpha/beta hydrolase fold; SPTR: Beta-lactamase; PFAM: Beta-lactamase; alpha/beta hydrolase fold.
  
    0.522
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.