STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY54296.1InterPro IPR010476; KEGG: dfe:Dfer_4532 rhamnose-proton symporter; PFAM: RhaT l-rhamnose-proton symport 2; SPTR: RhaT l-rhamnose-proton symport 2; PFAM: L-rhamnose-proton symport protein (RhaT). (358 aa)    
Predicted Functional Partners:
ADY54295.1
Transcriptional regulator, GntR family; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524; KEGG: phe:Phep_3881 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Putative transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family.
 
    0.862
ADY54299.1
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: phe:Phep_3882 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Carbohydrate kinase FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
 
  
 0.855
ADY54297.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG3347 conserved hypothetical protein; InterPro IPR002347: IPR 002198: IPR 013454: IPR 001303; KEGG: phe:Phep_3884 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; SPTR: Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   
 0.845
ADY54298.1
COGs: COG4952 sugar isomerase; InterPro IPR012307; KEGG: phe:Phep_3883 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Xylose isomerase domain protein; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype.
 
     0.707
ADY50922.1
InterPro IPR006104; KEGG: phe:Phep_2749 glycoside hydrolase family 2 sugar binding; PFAM: glycoside hydrolase family 2 sugar binding; SPTR: Glycoside hydrolase family 2 sugar binding.
 
     0.555
ADY53945.1
Glycosyl hydrolase family 88; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: bth:BT_2921 hypothetical protein; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl hydrolase, family 88; PFAM: Glycosyl Hydrolase Family 88.
  
     0.512
ADY54268.1
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.463
ADY52755.1
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_1023 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
  
    0.455
ADY53789.1
Protein involved in gliding motility RemB; KEGG: phe:Phep_3918 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.422
ADY54264.1
Glycosyl hydrolase family 88; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: sli:Slin_1806 glycosyl hydrolase family 88; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl hydrolase family 88; PFAM: Glycosyl Hydrolase Family 88.
  
     0.400
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.