STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY54301.1Protein involved in gliding motility GldF; InterPro IPR019860; KEGG: phe:Phep_3237 ABC-2 type transporter; SPTR: ABC-2 type transporter; TIGRFAM: gliding motility-associated ABC transporter permease protein GldF; TIGRFAM: gliding motility-associated ABC transporter permease protein GldF. (242 aa)    
Predicted Functional Partners:
ADY54302.1
Gliding-associated putative ABC transporter substrate-binding component GldG; COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019863: IPR 019196; KEGG: phe:Phep_3236 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; PFAM: ABC-type uncharacterised transport system; SPTR: ABC-type uncharacterized transport system involved in gliding motility auxiliary component; TIGRFAM: gliding-associated putative ABC transporter substrate-binding component GldG; PFAM: ABC-type uncharacterized [...]
  
 0.996
ADY54300.1
Protein involved in gliding motility GldA; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR 003439; KEGG: cpi:Cpin_1163 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA.
 
 
 0.965
ADY54174.1
KEGG: pmx:PERMA_1259 nitrous-oxide reductase accessory protein NosL; SPTR: Putative uncharacterized protein; PFAM: NosL.
  
 
 0.789
ADY54173.1
Periplasmic copper-binding protein; COGs: COG3420 Nitrous oxidase accessory protein; InterPro IPR006626; KEGG: dfe:Dfer_0695 periplasmic copper-binding; SPTR: Periplasmic copper-binding; PFAM: Periplasmic copper-binding protein (NosD); TIGRFAM: parallel beta-helix repeat (two copies).
  
 
 0.766
ADY54303.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
    0.757
ADY53832.1
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR 003593: IPR 000209; KEGG: tte:TTE1863 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
 
 0.634
ADY54172.1
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR 003439; KEGG: dfe:Dfer_0696 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter.
  
 
 0.634
ADY53449.1
Protein involved in gliding motility GldJ; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: phe:Phep_4062 protein of unknown function DUF323; PFAM: protein of unknown function DUF323; SPTR: Possible gliding motility-related protein; possible serine kinase; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ.
  
   
 0.628
ADY53572.1
Protein involved in gliding motility GldD; InterPro IPR019850; KEGG: phe:Phep_4156 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: gliding motility-associated lipoprotein GldD; TIGRFAM: gliding motility-associated lipoprotein GldD.
  
   
 0.611
ADY54175.1
KEGG: fba:FIC_02108 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.608
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.