STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY54324.1COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR 000531; KEGG: phe:Phep_0830 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor. (949 aa)    
Predicted Functional Partners:
ADY54325.1
KEGG: cpi:Cpin_0175 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.899
ADY54323.1
Xylose isomerase domain-containing protein TIM barrel; COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307; KEGG: phe:Phep_3652 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel; Belongs to the hyi family.
       0.468
ADY54322.1
KEGG: amc:MADE_00432 putative nucleoside permease protein; SPTR: Nucleoside:H+ symporter; PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter.
       0.443
ADY53216.1
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR 000531; KEGG: cpi:Cpin_6217 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Possible TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain.
  
    0.429
Your Current Organism:
Pseudopedobacter saltans
NCBI taxonomy Id: 762903
Other names: P. saltans DSM 12145, Pedobacter saltans DSM 12145, Pedobacter saltans LMG 10337, Pedobacter saltans str. DSM 12145, Pedobacter saltans strain DSM 12145, Pseudopedobacter saltans DSM 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.