STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGF54799.1Hydrolase, NUDIX family; KEGG: ach:Achl_1487 3.0e-26 NUDIX hydrolase; K03574 7,8-dihydro-8-oxoguanine triphosphatase; Psort location: Cytoplasmic, score: 7.50. (165 aa)    
Predicted Functional Partners:
EGF54883.1
RNB-like protein; KEGG: krh:KRH_17360 1.8e-90 rnr; putative ribonuclease R; Psort location: Cytoplasmic, score: 7.50.
   
 0.894
nadE
NAD(+) synthase domain protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
 
 0.842
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
 0.831
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
  0.821
EGF55571.1
KEGG: ahe:Arch_0835 4.0e-173 DEAD/DEAH box helicase domain protein; K05592 ATP-dependent RNA helicase DeaD; Psort location: Cytoplasmic, score: 9.97.
    
 0.817
EGF55397.1
DEAD/DEAH box helicase; KEGG: krh:KRH_08450 2.2e-165 putative DEAD-box RNA helicase; Psort location: Cytoplasmic, score: 9.97.
    
 0.817
EGF49979.1
DEAD/DEAH box helicase; KEGG: rer:RER_23370 2.8e-133 ATP-dependent RNA helicase; Psort location: Cytoplasmic, score: 9.97.
    
 0.817
EGF54800.1
Conserved domain protein; KEGG: ath:AT5G27870 4.5e-12 pectinesterase family protein; Psort location: Cellwall, score: 9.20.
       0.778
EGF54801.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.778
EGF54802.1
Von Willebrand factor type A domain protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.778
Your Current Organism:
Actinomyces sp. F0386
NCBI taxonomy Id: 762963
Other names: A. sp. oral taxon 170 str. F0386, Actinomyces sp. oral taxon 170 str. F0386, Actinomyces sp. oral taxon 170 strain F0386
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.