STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGF53624.1Proteasome accessory factor PafA; KEGG: xce:Xcel_1490 1.4e-122 protein of unknown function DUF245 domain protein; K13571 proteasome accessory factor A; Psort location: Cytoplasmic, score: 7.50. (484 aa)    
Predicted Functional Partners:
EGF53627.1
Proteasome ATPase; KEGG: art:Arth_2173 9.4e-117 vesicle-fusing ATPase K13527; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.934
EGF53625.1
Ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family.
 
  
 0.898
arc
Proteasome ATPase; KEGG: art:Arth_2173 4.1e-139 vesicle-fusing ATPase K13527; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.843
EGF53628.1
tRNA methyltransferase complex GCD14 subunit; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
 
     0.735
EGF53626.1
Proteasome accessory factor PafA2; KEGG: stp:Strop_2247 4.0e-63 hypothetical protein; K13571 proteasome accessory factor A; Psort location: Cytoplasmic, score: 7.50.
 
    
0.712
EGF58240.1
Hypothetical protein.
  
     0.636
EGF54286.1
AMP-binding enzyme; KEGG: bur:Bcep18194_B0673 4.4e-238 non-ribosomal peptide synthetase modules K12240; Psort location: Cytoplasmic, score: 9.95.
   
 0.604
EGF53485.1
mIHF protein; KEGG: cmi:CMM_1780 1.9e-07 gmkA; putative guanylate kinase putative guanylate kinase (GMP kinase)/integration host factor (IHF) fusion protein K00942.
  
    0.593
EGF53630.1
Peptidase, M50 family; KEGG: syn:sll0528 8.4e-18 hypothetical protein; K01417; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.593
EGF52235.1
ATP-dependent Clp protease adaptor protein ClpS; Psort location: Cytoplasmic, score: 7.50; Belongs to the ClpS family.
  
     0.542
Your Current Organism:
Actinomyces sp. F0386
NCBI taxonomy Id: 762963
Other names: A. sp. oral taxon 170 str. F0386, Actinomyces sp. oral taxon 170 str. F0386, Actinomyces sp. oral taxon 170 strain F0386
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