STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH02068.1KEGG: apb:SAR116_1837 0.0036 phage integrase family protein K03733; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family. (411 aa)    
Predicted Functional Partners:
EHH02067.1
Hypothetical protein.
       0.757
EHG99536.1
Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1915 0.0031 tyrosine recombinase XerD K04763; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
  
     0.714
EHH02043.1
RteC protein.
  
     0.690
EHH01413.1
RteC protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.686
EHH02020.1
CHC2 zinc finger domain protein; KEGG: lrl:LC705_01527 1.7e-11 dnaG; DNA primase; K02316 DNA primase; Psort location: Cytoplasmic, score: 8.96.
  
     0.536
EHH02069.1
Hypothetical protein.
       0.467
EHH02023.1
Conjugative transposon TraM protein.
  
     0.466
EHH02039.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 1.3e-15 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
  
     0.449
EHG98624.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.425
EHG98602.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: gfo:GFO_3052 3.0e-45 two-component system sensor histidine kinase/response regulator hybrid K00936; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.422
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.