STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01936.1Hypothetical protein. (39 aa)    
Predicted Functional Partners:
EHH01937.1
Putative bactoprenol glucosyl transferase-like protein; KEGG: ppy:PPE_04340 4.2e-91 putative glycosyl transferase YkoT; Psort location: CytoplasmicMembrane, score: 10.00.
       0.701
EHH01938.1
GtrA-like protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.701
EHH01939.1
Hypothetical protein; KEGG: ftu:FTT_0455c 1.4e-25 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.701
EHH01940.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.701
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.458
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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