STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01746.1TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.49. (798 aa)    
Predicted Functional Partners:
EHH01100.1
TonB family domain protein.
  
   0.739
EHH00816.1
TonB-dependent receptor.
  
   0.624
EHH01959.1
TonB family domain protein.
  
   0.550
EHH01747.1
Response regulator receiver domain protein; KEGG: dfe:Dfer_1574 2.3e-122 histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.542
EHH01085.1
TonB family domain protein.
  
   0.513
EHH00611.1
Hypothetical protein; KEGG: sde:Sde_0231 8.3e-06 histidine kinase; Psort location: OuterMembrane, score: 9.52.
  
     0.449
EHG99204.1
Hypothetical protein; KEGG: sde:Sde_0231 0.00077 histidine kinase.
  
     0.449
EHH01095.1
Hypothetical protein.
  
    0.429
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
 
 
   0.426
EHG98128.1
Hypothetical protein.
   
   0.426
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.