STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01856.1Transporter gate domain protein; Psort location: CytoplasmicMembrane, score: 10.00. (411 aa)    
Predicted Functional Partners:
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
      0.881
EHH01857.1
Polysaccharide biosynthesis protein; KEGG: cco:CCC13826_0528 1.9e-07 cytosol aminopeptidase; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.812
EHH01858.1
Hydrophobic domain protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.705
EHH01859.1
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
       0.694
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.547
crcB
Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.529
EHG98866.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
   
 0.498
EHH01896.1
KEGG: bvu:BVU_1257 9.8e-99 dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase; Psort location: Cytoplasmic, score: 9.97; Belongs to the DapB family.
      
 0.422
EHG98683.1
KEGG: bpm:BURPS1710b_1858 1.1e-13 Ser/Thr protein phosphatase family protein K01175; Psort location: Cytoplasmic, score: 8.96.
 
     0.415
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
      
 0.407
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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