STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01601.1TonB-dependent receptor. (1085 aa)    
Predicted Functional Partners:
EHH01602.1
SusD family protein.
   0.951
EHH01600.1
Hypothetical protein.
 
     0.938
EHH01193.1
Hypothetical protein.
 
   0.826
EHH01267.1
Hypothetical protein.
 
   0.824
EHH00445.1
Hypothetical protein.
 
   0.807
EHH01884.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
 
 
   0.771
EHH01882.1
Hypothetical protein.
 
     0.735
EHH01071.1
Hypothetical protein.
  
 
   0.697
EHH01289.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.52.
  
  
  0.687
EHH01288.1
Hypothetical protein.
  
     0.671
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.