STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01339.1Hypothetical protein; KEGG: bvi:Bcep1808_6495 3.3e-34 hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (273 aa)    
Predicted Functional Partners:
EHH01340.1
Hypothetical protein; KEGG: fra:Francci3_2649 8.1e-40 hypothetical protein K01854; Psort location: Cytoplasmic, score: 8.96; overlaps another CDS with the same product name.
     0.988
EHG99879.1
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
    
 0.555
EHH02079.1
KEGG: pru:PRU_2201 1.8e-152 argD; acetylornithine transaminase K00818; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.518
EHH01341.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00; overlaps another CDS with the same product name.
       0.516
EHG98458.1
UDP-glucose 4-epimerase; KEGG: bvu:BVU_3883 5.9e-147 putative UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase; Psort location: Cytoplasmic, score: 9.97; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
  0.485
bioA
Adenosylmethionine-8-amino-7-oxononanoate transaminase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.
    
  0.481
EHH01302.1
comF family protein; KEGG: chu:CHU_3495 8.1e-24 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 9.97.
  
    0.471
EHH00842.1
KEGG: bvu:BVU_1187 3.1e-102 uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.405
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.