STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01347.1KEGG: apb:SAR116_1748 0.00091 phage integrase family protein; Psort location: Cytoplasmic, score: 8.96. (219 aa)    
Predicted Functional Partners:
EHH01346.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
     0.987
EHH01348.1
Hypothetical protein.
       0.773
EHH00647.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.740
EHG99704.1
RteC protein; KEGG: smf:Smon_0593 0.00063 putative CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA; Psort location: Cytoplasmic, score: 8.96.
  
     0.569
EHG98624.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.506
EHH00165.1
RteC protein.
  
     0.480
EHH01691.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.473
EHG99782.1
Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1514 0.0014 probable site-specific integrase/recombinase; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
  
     0.461
EHH01349.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.447
EHH01350.1
LexA DNA binding domain protein; KEGG: ssm:Spirs_4290 2.2e-140 putative transcriptional regulator; K03655 ATP-dependent DNA helicase RecG; Psort location: Cytoplasmic, score: 8.96.
       0.447
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.