STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01129.1Hypothetical protein. (642 aa)    
Predicted Functional Partners:
EHH01128.1
Hypothetical protein.
    0.966
EHH01130.1
KEGG: srm:SRM_02163 3.6e-76 GH3; GH3 auxin-responsive promoter superfamily; Psort location: Cytoplasmic, score: 8.96.
       0.777
EHH00536.1
Hypothetical protein.
  
    0.772
EHG99347.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 9.49.
  
     0.762
EHH01918.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.760
EHH01723.1
KEGG: pvx:PVX_080270 0.0035 hypothetical protein; K12603 CCR4-NOT transcription complex subunit 6; Psort location: OuterMembrane, score: 9.49.
  
     0.756
EHH00043.1
Outer membrane assembly lipoprotein YfiO.
  
     0.756
EHH00832.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.749
EHG98780.1
Hypothetical protein.
  
     0.747
EHH01309.1
Outer membrane protein, OMP85 family; KEGG: apb:SAR116_0511 3.0e-12 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
  
     0.745
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.