STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01156.1SNARE-like domain protein; KEGG: bmd:BMD_2997 7.2e-16 alkaline phosphatase; Psort location: CytoplasmicMembrane, score: 10.00. (213 aa)    
Predicted Functional Partners:
EHH01157.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.737
EHH01158.1
Phosphate transporter family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.699
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
    0.643
EHH01155.1
Hypothetical protein.
       0.533
EHG99275.1
KEGG: gfo:GFO_2145 8.2e-63 NUDIX family hydrolase K01529.
    
 0.462
EHH01154.1
Glycosyltransferase, group 2 family protein; KEGG: bsu:BSU34280 1.5e-31 epsJ; putative glycosyl transferase; Psort location: CytoplasmicMembrane, score: 7.88.
       0.436
EHH00047.1
KEGG: gfo:GFO_2227 5.0e-24 LysM domain-containing proteins K01423; Psort location: Cytoplasmic, score: 8.96.
   
   0.431
EHH01153.1
KEGG: pru:PRU_1535 5.4e-43 group 2 family glycosyltransferase; Psort location: CytoplasmicMembrane, score: 7.88.
       0.423
mutL
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
      0.410
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.