STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH01265.1Sigma factor regulatory protein, FecR/PupR family; Psort location: Cytoplasmic, score: 8.96. (365 aa)    
Predicted Functional Partners:
EHG98935.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.835
EHH00597.1
Sigma-70 region 2; KEGG: chu:CHU_3562 1.3e-09 rpoE; ECF subfamily RNA polymerase sigma factor K03088; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.833
EHG98564.1
Sigma-70 region 2; KEGG: sds:SDEG_0623 6.2e-10 DNA-directed RNA polymerase specialized sigma subunit K03088; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.783
EHH01266.1
TonB-dependent receptor plug domain protein.
 
     0.744
EHH01264.1
RNA polymerase sigma-70 factor; KEGG: chu:CHU_3562 9.2e-16 rpoE; ECF subfamily RNA polymerase sigma factor K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.734
EHH01267.1
Hypothetical protein.
 
  
  0.723
EHG98202.1
Hypothetical protein.
  
    0.701
EHH01071.1
Hypothetical protein.
  
  
  0.677
EHG98796.1
TonB-dependent receptor plug domain protein.
  
    0.662
EHG98167.1
Hypothetical protein.
  
    0.650
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.