STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (339 aa)    
Predicted Functional Partners:
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.649
EHH01325.1
O-methyltransferase; KEGG: bfs:BF4276 1.2e-86 putative O-methyltransferase; K00599; Psort location: Cytoplasmic, score: 9.97.
  
    0.599
EHH01326.1
Pyruvate kinase; KEGG: bvu:BVU_0876 2.7e-213 pyruvate kinase K00873; Psort location: Cytoplasmic, score: 9.97.
   
   0.555
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.518
EHG99747.1
FtsK/SpoIIIE family protein; KEGG: reh:H16_A1582 1.9e-94 DNA segregation ATPase FtsK/SpoIIIE related protein K03466; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.506
EHH01323.1
Efflux ABC transporter, permease protein; KEGG: apb:SAR116_0522 1.1e-26 ABC-type transport system, permease component K09808; Psort location: CytoplasmicMembrane, score: 10.00.
       0.504
EHH00146.1
Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1915 0.00012 tyrosine recombinase XerD K04763; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
  
     0.504
EHH01329.1
Tetratricopeptide repeat protein; KEGG: pmj:P9211_17811 0.0035 tig; trigger factor K03545; Psort location: Periplasmic, score: 9.83.
       0.502
EHH01330.1
Redoxin family protein; KEGG: pmz:HMPREF0659_A6280 3.1e-47 antioxidant, AhpC/TSA family; Psort location: Cytoplasmic, score: 8.96.
       0.469
EHH01331.1
Mg chelatase-like protein; KEGG: chu:CHU_0354 9.8e-170 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 9.97.
       0.461
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.