STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH00825.1THUMP domain protein; KEGG: fba:FIC_01642 4.2e-82 methyltransferase K07444; Psort location: Cytoplasmic, score: 9.97; Belongs to the methyltransferase superfamily. (518 aa)    
Predicted Functional Partners:
EHH00826.1
Peptidase, S9A/B/C family, catalytic domain protein; KEGG: bvu:BVU_1094 6.9e-240 dipeptidyl peptidase IV; K01278 dipeptidyl-peptidase 4.
  
    0.822
EHH00831.1
KEGG: bvu:BVU_1102 1.4e-92 putative metal ABC transporter, ATP-binding protein; K09817 zinc transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 7.88.
  
    0.802
purD
KEGG: bvu:BVU_1095 6.9e-185 phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase; Psort location: Cytoplasmic, score: 9.97; Belongs to the GARS family.
       0.799
EHH00828.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.799
EHH00830.1
ABC transporter, substrate-binding protein; KEGG: sah:SaurJH1_2478 2.2e-18 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 7.88.
       0.799
EHH00829.1
SNARE-like domain protein; KEGG: oih:OB2407 7.6e-12 alkaline phosphatase K01077; Psort location: CytoplasmicMembrane, score: 10.00.
       0.788
EHH01308.1
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
    0.712
EHG99744.1
Putative 23S rRNA m5C1962 methyltransferase; KEGG: azo:azo0598 5.3e-68 SAM dependent methyl transferase K06969; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.671
EHH00824.1
Putative serine O-acetyltransferase; KEGG: bth:BT_3256 2.6e-121 serine acetyltransferase; K00640 serine O-acetyltransferase; Psort location: Cytoplasmic, score: 9.97.
       0.658
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
   
    0.614
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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