STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH00268.1Cytochrome d ubiquinol oxidase, subunit II. (383 aa)    
Predicted Functional Partners:
EHH00267.1
Cytochrome D ubiquinol oxidase subunit I.
 
 0.999
EHH00266.1
Hypothetical protein.
 
     0.920
udk
Uridine kinase.
       0.746
EHH00270.1
Transglycosylase SLT domain protein.
       0.746
EHH00271.1
Hypothetical protein.
       0.746
EHH00783.1
KEGG: pmz:HMPREF0659_A5049 5.5e-121 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240; Psort location: Cytoplasmic, score: 8.96.
     
 0.588
EHH00264.1
Hypothetical protein.
       0.572
EHH00015.1
KEGG: sub:SUB0808 1.8e-186 pyridine nucleotide-disulphide oxidoreductase family protein; Psort location: Cytoplasmic, score: 9.97; Belongs to the sulfur carrier protein TusA family.
   
 
 0.507
EHH00781.1
KEGG: bvu:BVU_1239 3.1e-79 putative cytochrome b subunit; K00241 succinate dehydrogenase cytochrome b-556 subunit; Psort location: CytoplasmicMembrane, score: 10.00.
     
  0.499
EHH00025.1
4Fe-4S binding domain protein; KEGG: eci:UTI89_C2483 4.0e-16 napG; quinol dehydrogenase periplasmic component K02573; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.462
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.