STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH00276.1Hypothetical protein. (584 aa)    
Predicted Functional Partners:
EHH00278.1
Fasciclin domain protein.
  
    0.778
EHH00277.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 9.49.
       0.773
EHH00279.1
Putative flagellar protein FliS.
  
    0.764
EHH00275.1
Hypothetical protein.
       0.732
EHH00280.1
SusD family protein; Psort location: OuterMembrane, score: 9.52.
       0.676
EHH00273.1
Hypothetical protein.
       0.633
EHH00274.1
Sigma-70 region 2; KEGG: ctc:CTC01817 4.4e-06 RNA polymerase factor sigma-70; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
       0.633
EHH00281.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.49.
       0.615
EHH00282.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
    0.555
EHH00272.1
Hypothetical protein.
       0.476
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.