STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH00156.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (279 aa)    
Predicted Functional Partners:
EHH00154.1
KEGG: lsg:lse_2221 2.9e-12 transcriptional regulator, GntR family K07979.
       0.773
EHH00155.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
      
0.773
EHH00157.1
KEGG: bao:BAMF_2828 2.1e-25 ytrB; ABC transporter (ATP-binding protein); Psort location: CytoplasmicMembrane, score: 7.88.
       0.773
EHH00153.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
      
0.762
EHH00152.1
Glycosyl hydrolase, family 43; KEGG: cja:CJA_3018 8.6e-68 gly43N; beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N.
       0.456
EHH00158.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.425
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.410
EHH00160.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
       0.401
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.