STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH00146.1Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1915 0.00012 tyrosine recombinase XerD K04763; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family. (388 aa)    
Predicted Functional Partners:
EHH01346.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.772
EHG99801.1
Hypothetical protein; KEGG: apb:SAR116_1016 0.00046 phage integrase family protein.
  
     0.772
EHH00176.1
Integron integrase; KEGG: apb:SAR116_1915 7.3e-14 tyrosine recombinase XerD K04763; Psort location: Cytoplasmic, score: 9.97; Belongs to the 'phage' integrase family.
  
     0.511
xerC
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.504
xerC-2
Putative tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.503
EHH00147.1
Hypothetical protein.
       0.444
EHG98624.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.437
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.