STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH00027.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (140 aa)    
Predicted Functional Partners:
EHH00026.1
Tat pathway signal sequence domain protein; KEGG: npu:Npun_F0061 1.9e-18 aldo/keto reductase K07079.
     0.976
EHH00025.1
4Fe-4S binding domain protein; KEGG: eci:UTI89_C2483 4.0e-16 napG; quinol dehydrogenase periplasmic component K02573; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.814
EHH02091.1
KEGG: sfu:Sfum_2744 2.0e-19 TonB-dependent receptor; K01802 peptidylprolyl isomerase; Psort location: OuterMembrane, score: 9.93.
    0.753
EHH00028.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.674
EHH00021.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.672
EHH00023.1
Transcriptional regulator, AraC family; KEGG: bha:BH0394 1.7e-06 adaA; methylphosphotriester-DNA alkyltransferase K13530; Psort location: Cytoplasmic, score: 9.97.
       0.672
EHH00024.1
Hypothetical protein; KEGG: ctu:Ctu_13020 0.0026 fldA; flavodoxin FldA K03839; Psort location: Cytoplasmic, score: 8.96.
       0.672
tatA
Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.645
tatC
Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
       0.645
EHH00019.1
Outer membrane efflux protein; KEGG: ccv:CCV52592_0160 1.0e-06 fadD; long-chain-fatty-acid--CoA ligase K12340.
       0.503
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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