STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHH00038.1Efflux transporter, RND family, MFP subunit; KEGG: rcp:RCAP_rcc02894 1.1e-14 mdtE; multidrug resistance protein MdtE K03585; Psort location: CytoplasmicMembrane, score: 7.88; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (360 aa)    
Predicted Functional Partners:
EHH00036.1
Psort location: OuterMembrane, score: 9.93.
 
  0.977
EHH00037.1
RND transporter, HAE1 family; KEGG: rcp:RCAP_rcc00432 8.7e-162 mdtB; multidrug resistance protein MdtB; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.977
EHH00518.1
RND transporter, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.857
EHG98931.1
RND transporter, HAE1/HME family, permease protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.854
EHG99383.1
RND transporter, HAE1 family; KEGG: rcp:RCAP_rcc02895 1.7e-156 mdtF; multidrug resistance protein MdtF; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.845
EHG98932.1
Hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.834
EHH00020.1
RND transporter, HAE1/HME family, permease protein; KEGG: ddd:Dda3937_02820 1.2e-58 yegN, mdtB; acriflavin resistance plasma membrane protein K07788; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.795
EHG98711.1
Hypothetical protein; KEGG: rcp:RCAP_rcc02895 2.1e-42 mdtF; multidrug resistance protein MdtF; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.742
EHH00849.1
Heavy metal efflux pump, CzcA family; KEGG: dat:HRM2_00450 1.8e-113 rndA; RndA K07787; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.739
EHG99256.1
Outer membrane efflux protein; KEGG: cco:CCC13826_0688 0.00010 L-seryl-tRNA(sec) selenium transferase; Psort location: OuterMembrane, score: 10.00.
  
  0.720
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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