STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (268 aa)    
Predicted Functional Partners:
EHG98301.1
Ribosomal protein L17; KEGG: apb:SAR116_2416 6.3e-17 ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL17 family.
 
  
 0.891
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.852
EHG99925.1
Putative membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.821
EHG98220.1
Ribosomal protein L17; KEGG: apb:SAR116_2416 3.5e-07 ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.766
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
   
 
 0.725
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.708
EHH00015.1
KEGG: sub:SUB0808 1.8e-186 pyridine nucleotide-disulphide oxidoreductase family protein; Psort location: Cytoplasmic, score: 9.97; Belongs to the sulfur carrier protein TusA family.
   
 
 0.701
EHG98460.1
Metallo-beta-lactamase domain protein; KEGG: fba:FIC_00295 1.3e-34 hydroxyacylglutathione hydrolase; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.701
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.700
EHG98234.1
Hydrolase, NUDIX family; KEGG: tye:THEYE_A1641 5.5e-25 NUDIX hydrolase 3; Psort location: Cytoplasmic, score: 8.96.
 
      0.691
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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