STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG99827.1Toxin-antitoxin system, toxin component, RelE family; Psort location: Cytoplasmic, score: 8.96. (133 aa)    
Predicted Functional Partners:
EHG99826.1
DNA-binding helix-turn-helix protein; KEGG: bcv:Bcav_1535 0.00028 transcriptional regulator, LacI family.
  
 
 0.902
EHH01569.1
DNA-binding helix-turn-helix protein; KEGG: sna:Snas_3182 9.2e-05 transcriptional regulator, XRE family; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.699
EHG99828.1
Hypothetical protein.
       0.505
EHG99825.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.424
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.