STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG99871.1YbbR-like protein; Psort location: Cytoplasmic, score: 8.96. (334 aa)    
Predicted Functional Partners:
dacA
TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.879
EHG99869.1
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
     0.838
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.826
EHG99870.1
Preprotein translocase, YajC subunit; KEGG: apb:SAR116_0407 7.1e-09 YajC K03210; Psort location: CytoplasmicMembrane, score: 9.82.
       0.820
EHG98367.1
7TM receptor with intracellular HD hydrolase; KEGG: bmd:BMD_4538 1.2e-63 metal-dependent phosphohydrolase K07037; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.756
EHG99315.1
KEGG: apb:SAR116_1534 0.0085 putative TPR repeat protein.
 
     0.746
EHH00536.1
Hypothetical protein.
  
     0.721
EHH00539.1
Hypothetical protein.
  
     0.672
EHH01129.1
Hypothetical protein.
  
     0.658
EHG99873.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.645
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.