STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG99696.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (434 aa)    
Predicted Functional Partners:
EHG99697.1
KEGG: bth:BT_0105 2.2e-284 DNA topoisomerase I omega subunit; K03169 DNA topoisomerase III; Psort location: Cytoplasmic, score: 9.97.
   
   0.752
EHG99694.1
UvrD/REP helicase; KEGG: fps:FP1561 1.5e-219 hypothetical protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
  
   0.688
EHG99389.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 
 0.581
EHG99368.1
UvrD/REP helicase; KEGG: pmz:HMPREF0659_A6762 6.9e-185 UvrD/REP helicase; Psort location: Cytoplasmic, score: 8.96.
   
   0.503
EHG98840.1
UvrD/REP helicase; KEGG: eat:EAT1b_1102 2.4e-127 UvrD/REP helicase; K03658 DNA helicase IV; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.437
EHG99695.1
Divergent AAA domain protein; KEGG: ssm:Spirs_4290 1.7e-108 putative transcriptional regulator; K03655 ATP-dependent DNA helicase RecG; Psort location: Cytoplasmic, score: 8.96.
  
    0.407
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.