STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG99708.1Transcriptional regulator, AraC family; KEGG: dfe:Dfer_1607 2.1e-06 histidine kinase; Psort location: Cytoplasmic, score: 8.96. (272 aa)    
Predicted Functional Partners:
EHG99707.1
Putative chloramphenicol O-acetyltransferase; KEGG: fsu:Fisuc_0604 2.4e-72 chloramphenicol acetyltransferase; K00638 chloramphenicol O-acetyltransferase.
 
     0.780
EHG99705.1
Putative chloramphenicol O-acetyltransferase; KEGG: spj:MGAS2096_Spy1118 1.2e-79 virginiamycin A acetyltransferase K00680; Psort location: Cytoplasmic, score: 9.26.
 
     0.582
EHH00681.1
Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.579
EHH00164.1
KEGG: bld:BLi02836 1.8e-06 adaA; AdaA; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
     0.573
EHG99706.1
MATE efflux family protein; KEGG: apb:SAR116_1482 8.1e-14 DNA-damage-inducible protein F K03327; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.500
EHG98810.1
KEGG: gym:GYMC10_3774 6.4e-14 transcriptional regulator, AraC family K13530; Psort location: Cytoplasmic, score: 9.97.
  
   0.457
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.