STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG99782.1Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1514 0.0014 probable site-specific integrase/recombinase; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family. (296 aa)    
Predicted Functional Partners:
EHG99781.1
DNA binding domain, excisionase family.
 
     0.876
EHG99805.1
Hypothetical protein; KEGG: hse:Hsero_0876 0.0025 site-specific phage recombinase/integrase.
  
     0.775
EHG98653.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.96.
  
     0.774
EHG98654.1
Hypothetical protein.
  
     0.735
EHG98655.1
Hypothetical protein.
 
     0.714
EHG99795.1
DNA binding domain, excisionase family.
  
     0.654
EHG98657.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 2.0e-14 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
  
     0.612
EHH01742.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.592
EHH00848.1
Efflux transporter, RND family, MFP subunit; Psort location: Cytoplasmic, score: 8.96; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.582
EHH00850.1
Outer membrane efflux protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.574
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.