STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG99555.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (224 aa)    
Predicted Functional Partners:
EHG99556.1
Hypothetical protein.
       0.820
EHG99557.1
RNA methyltransferase, RsmD family; KEGG: fps:FP0986 1.2e-31 modification methyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.792
EHH00728.1
KEGG: chu:CHU_2979 0.0036 TPR repeat-containing protein K06026.
  
     0.773
EHH00487.1
Hypothetical protein.
  
     0.771
EHH01095.1
Hypothetical protein.
  
     0.762
EHH01106.1
Hypothetical protein.
  
     0.758
EHG98451.1
Positive regulator of sigma(E), RseC/MucC.
  
     0.734
EHH01094.1
Hypothetical protein.
  
     0.731
EHH01100.1
TonB family domain protein.
  
     0.707
EHG99554.1
Hypothetical protein; KEGG: bfs:BF0679 1.2e-162 putative ATP-dependent exodeoxyribonuclease; K01144 exodeoxyribonuclease V; Psort location: Cytoplasmic, score: 8.96.
 
     0.704
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.