STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG99520.1KEGG: pru:PRU_0728 6.9e-84 family 25 glycosyl hydrolase. (784 aa)    
Predicted Functional Partners:
EHG99176.1
Phosphate-selective porin O and P.
  
     0.636
EHG99521.1
KEGG: fjo:Fjoh_3113 6.6e-148 alpha-N-arabinofuranosidase K01209.
 
     0.611
EHH01107.1
Hypothetical protein.
  
     0.587
EHH01825.1
HTH domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.570
EHG99519.1
Hypothetical protein; KEGG: pjd:Pjdr2_4274 5.5e-21 alpha-L-fucosidase.
 
     0.538
EHH01128.1
Hypothetical protein.
  
     0.477
EHG98267.1
Hypothetical protein; KEGG: edi:EDI_341030 7.4e-22 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 9.97.
  
     0.450
EHG98444.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
  
     0.442
EHH01198.1
Hypothetical protein.
  
     0.430
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
  0.414
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.