STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG99118.1ATPase, AAA family; KEGG: cch:Cag_0626 1.7e-110 recombination factor protein RarA K07478; Psort location: Cytoplasmic, score: 9.97. (423 aa)    
Predicted Functional Partners:
EHG98944.1
Macro domain protein.
      0.907
EHG99119.1
Hypothetical protein.
       0.767
rpsP
Ribosomal protein S16; KEGG: apb:SAR116_1817 1.5e-24 ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS16 family.
 
     0.622
EHH00642.1
KEGG: bvu:BVU_2070 3.1e-212 ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.612
EHG98773.1
ATP-dependent DNA helicase RecQ.
    
 
 0.612
EHG98270.1
KEGG: bfs:BF3249 2.2e-218 recQ2; putative ATP-dependent DNA helicase K03654; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.612
EHH01496.1
Putative leucine-responsive regulatory protein.
      0.607
EHG99389.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 
 0.596
EHG99747.1
FtsK/SpoIIIE family protein; KEGG: reh:H16_A1582 1.9e-94 DNA segregation ATPase FtsK/SpoIIIE related protein K03466; Psort location: CytoplasmicMembrane, score: 10.00.
    0.576
EHG99120.1
Oligopeptide transporter, OPT family; KEGG: bac:BamMC406_4966 0.0012 monosaccharide-transporting ATPase K10440; Psort location: CytoplasmicMembrane, score: 10.00.
       0.508
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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