STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98964.1Hypothetical protein; KEGG: cco:CCC13826_2309 1.3e-46 hydrogenase-4 component C; Psort location: Cytoplasmic, score: 8.96. (290 aa)    
Predicted Functional Partners:
EHG98963.1
Putative hemolysin.
     0.980
EHH00025.1
4Fe-4S binding domain protein; KEGG: eci:UTI89_C2483 4.0e-16 napG; quinol dehydrogenase periplasmic component K02573; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
  0.787
EHH00729.1
KEGG: bvu:BVU_3892 1.2e-148 threonine dehydratase; K01754 threonine dehydratase; Psort location: Cytoplasmic, score: 9.97.
    
  0.720
EHH00353.1
Vitamin B12 dependent methionine synthase, activation domain protein; KEGG: pdi:BDI_0415 1.7e-71 putative 5-methyltetrahydrofolate--homocysteine methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase; Psort location: Cytoplasmic, score: 9.97.
     
 0.706
EHH00160.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.706
EHH00970.1
Homoserine dehydrogenase.
    
 0.702
EHG98965.1
MATE efflux family protein.
 
     0.667
EHH01494.1
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.554
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
    
  0.510
EHG99522.1
KEGG: bth:BT_3821 1.3e-121 5,10-methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH); Psort location: Cytoplasmic, score: 9.97.
     
 0.479
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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