STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmHPutative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (157 aa)    
Predicted Functional Partners:
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.802
EHG98990.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.741
EHG99557.1
RNA methyltransferase, RsmD family; KEGG: fps:FP0986 1.2e-31 modification methyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.562
EHG98991.1
Oxidoreductase, 2-nitropropane dioxygenase family protein.
       0.480
EHH00857.1
Signal peptide protein, YSIRK family; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.467
EHH00925.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.453
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.453
EHG98441.1
KEGG: bvu:BVU_2289 5.5e-73 prmA; ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.421
EHH01089.1
NOL1/NOP2/sun family protein.
      
 0.414
EHG99834.1
S4 domain protein; KEGG: mct:MCR_0729 9.5e-14 heat shock protein 15 K04762; Psort location: Cytoplasmic, score: 9.97.
  
   
 0.413
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.