STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98889.1Capsular polysaccharide synthesis protein; Psort location: Cytoplasmic, score: 8.96. (317 aa)    
Predicted Functional Partners:
EHG98890.1
LICD family protein; KEGG: lci:LCK_01203 5.5e-41 licD; LicD family phosphotransferase K07271; Psort location: Cytoplasmic, score: 8.96.
       0.778
EHG98891.1
Bacterial transferase hexapeptide repeat protein; KEGG: rop:ROP_64760 2.4e-24 hypothetical protein; K00661 maltose O-acetyltransferase; Psort location: Cytoplasmic, score: 9.97.
       0.671
EHG99464.1
Hypothetical protein; KEGG: cce:Ccel_1688 0.0086 NADH/ubiquinone/plastoquinone (complex I); K12141 hydrogenase-4 component F; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.513
EHG98892.1
KEGG: pru:PRU_1530 6.8e-43 group 1 family glycosyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
    0.502
EHG98896.1
Polysaccharide biosynthesis protein; KEGG: cco:CCC13826_0528 3.1e-09 cytosol aminopeptidase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.469
EHG98893.1
Glycosyltransferase, family 11; KEGG: sat:SYN_02664 6.2e-26 alpha-1,2-fucosyltransferase K00754; Psort location: Cytoplasmic, score: 8.96.
       0.462
EHG98894.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.462
EHG98895.1
KEGG: bcl:ABC3103 4.2e-18 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K09809; Psort location: CytoplasmicMembrane, score: 7.88.
       0.452
EHG99153.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.422
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.