STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98787.1Pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family. (253 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase.
 
  
 0.958
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.856
EHG98402.1
Ribosome-associated GTPase EngA domain protein; KEGG: lac:LBA0969 3.3e-34 engA, yfgK, yphC; GTP-binding protein EngA K03977; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.834
EHG98229.1
KEGG: bvu:BVU_2613 3.6e-108 exodeoxyribonuclease; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 9.97.
  
    0.833
asnS
asparagine--tRNA ligase.
       0.788
EHG98786.1
Hypothetical protein.
       0.773
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
   
 0.557
EHG98785.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.550
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.486
EHH00333.1
Hydrogenase maturation GTPase HydF; KEGG: bad:BAD_0815 1.8e-11 engA; bifunctional cytidylate kinase/GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.483
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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