STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98810.1KEGG: gym:GYMC10_3774 6.4e-14 transcriptional regulator, AraC family K13530; Psort location: Cytoplasmic, score: 9.97. (287 aa)    
Predicted Functional Partners:
EHG98933.1
Transcriptional regulator, AraC family.
  
  
  0.798
EHG98809.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
EHH00864.1
KEGG: bur:Bcep18194_C7173 6.2e-11 two component AraC family transcriptional regulator K05971; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.764
EHH00023.1
Transcriptional regulator, AraC family; KEGG: bha:BH0394 1.7e-06 adaA; methylphosphotriester-DNA alkyltransferase K13530; Psort location: Cytoplasmic, score: 9.97.
  
     0.752
EHG98715.1
Transcriptional regulator, AraC family; KEGG: lla:L0149 1.8e-10 adaA; methylphosphotriester-DNA alkyltransferase; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
     0.652
EHH00164.1
KEGG: bld:BLi02836 1.8e-06 adaA; AdaA; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
   0.587
EHH01699.1
Transcriptional regulator, AraC family.
  
     0.545
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.513
EHH01364.1
Malate dehydrogenase; KEGG: bth:BT_1969 0. malic enzyme K00029; Psort location: Cytoplasmic, score: 9.97.
   
 
  0.508
EHG99432.1
Transcriptional regulator, AraC family; KEGG: dfe:Dfer_1574 2.2e-39 histidine kinase; Psort location: Cytoplasmic, score: 8.96.
  
  
  0.502
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.