STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98844.1Sigma-70, region 4; KEGG: reh:H16_A2563 1.2e-11 rpoE1; RNA polymerase sigma factor RpoE K03088; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)    
Predicted Functional Partners:
EHG98843.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.776
EHH00501.1
Putative RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
EHH01176.1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 2.7e-16 ECF subfamily RNA polymerase sigma-24 factor K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.773
EHG98845.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EHH01679.1
Sigma-70 region 2; KEGG: reh:H16_A2923 2.6e-11 rpoE4; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K03088; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.763
EHH01264.1
RNA polymerase sigma-70 factor; KEGG: chu:CHU_3562 9.2e-16 rpoE; ECF subfamily RNA polymerase sigma factor K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.760
EHG98388.1
Sigma-70 region 2; KEGG: reh:H16_A1096 1.6e-06 rpoE3; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K03088; Psort location: CytoplasmicMembrane, score: 7.88; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.658
EHH00274.1
Sigma-70 region 2; KEGG: ctc:CTC01817 4.4e-06 RNA polymerase factor sigma-70; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.653
EHG98841.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.610
EHG98842.1
Hypothetical protein.
       0.610
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.